TransPlant User Needs Survey

17% of survey complete.

Context: Following EU review recommendations, this survey aims at collecting bioinformatics stakeholders needs and to describe some existing initiatives launched in the field of agronomical research to be compared to TransPlant scope. The goal is to identify potential needs not already covered by TransPlant project. The second objective is to draw the landscape of possibly overlapping initiative in the field or related fields to better coordinate developments and possibly avoid redundancy.

Based to this survey and on other actions of WP2 and WP4, EU will be given in summer 2013 a review on existing initiatives in the field of transnational research for bioinformatics in crop science and an overview of the needs of the stakeholders in terms of bio-informatic applications.

This survey contains 41 questions. Thanks you in advance for your involvement.

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* 1. Personal information : Family name (optional)

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* 2. First name (optional)

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* 3. Name of your Institute, company...

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* 4. Category of your provenance

	large	medium	small
commercial	commercial large	commercial medium	commercial small
university	university large	university medium	university small
non university academic	non university academic large	non university academic medium	non university academic small
academic policy-relarted	academic policy-relarted large	academic policy-relarted medium	academic policy-relarted small

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* 5. Position

Graduate student

Professor

Research scientist

Other (please indicate)

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* 6. How old are you ?

<30

31-40

41-50

51-60

>60

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* 7. What are your fields of expertise?

Structural genomics

Functional genomics

Quantitative genetics

Genetics and applied mathematics and statistics

Population genetics

Breeding

Agronomy

Physiology

Plant Biology

Biochemistry

Bioinformatics

Autre (veuillez préciser)

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* 8. What data are you interested in ?

please rank according to the importance of the data category for your research

	1 : maximum priority	2 : medium priority	3: low priority	4: no priority
genome sequences (NGS included)	genome sequences (NGS included) 1 : maximum priority	genome sequences (NGS included) 2 : medium priority	genome sequences (NGS included) 3: low priority	genome sequences (NGS included) 4: no priority
sequence variation (SNP, CNV, PAV...)	sequence variation (SNP, CNV, PAV...) 1 : maximum priority	sequence variation (SNP, CNV, PAV...) 2 : medium priority	sequence variation (SNP, CNV, PAV...) 3: low priority	sequence variation (SNP, CNV, PAV...) 4: no priority
genetics maps (markers)	genetics maps (markers) 1 : maximum priority	genetics maps (markers) 2 : medium priority	genetics maps (markers) 3: low priority	genetics maps (markers) 4: no priority
genetics maps (QTLs)	genetics maps (QTLs) 1 : maximum priority	genetics maps (QTLs) 2 : medium priority	genetics maps (QTLs) 3: low priority	genetics maps (QTLs) 4: no priority
curated gene models	curated gene models 1 : maximum priority	curated gene models 2 : medium priority	curated gene models 3: low priority	curated gene models 4: no priority
metabolic profiles	metabolic profiles 1 : maximum priority	metabolic profiles 2 : medium priority	metabolic profiles 3: low priority	metabolic profiles 4: no priority
protein profiles	protein profiles 1 : maximum priority	protein profiles 2 : medium priority	protein profiles 3: low priority	protein profiles 4: no priority
resources for natural genetic diversity	resources for natural genetic diversity 1 : maximum priority	resources for natural genetic diversity 2 : medium priority	resources for natural genetic diversity 3: low priority	resources for natural genetic diversity 4: no priority
segregating populations or linkage desequilibrium panels	segregating populations or linkage desequilibrium panels 1 : maximum priority	segregating populations or linkage desequilibrium panels 2 : medium priority	segregating populations or linkage desequilibrium panels 3: low priority	segregating populations or linkage desequilibrium panels 4: no priority
phenotypes (classification, ontologies)	phenotypes (classification, ontologies) 1 : maximum priority	phenotypes (classification, ontologies) 2 : medium priority	phenotypes (classification, ontologies) 3: low priority	phenotypes (classification, ontologies) 4: no priority
phenotypes (experimental measurements)	phenotypes (experimental measurements) 1 : maximum priority	phenotypes (experimental measurements) 2 : medium priority	phenotypes (experimental measurements) 3: low priority	phenotypes (experimental measurements) 4: no priority
data citation	data citation 1 : maximum priority	data citation 2 : medium priority	data citation 3: low priority	data citation 4: no priority
long term preservation	long term preservation 1 : maximum priority	long term preservation 2 : medium priority	long term preservation 3: low priority	long term preservation 4: no priority

Autre (veuillez préciser)

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* 9. What analysis do you do ?

Genome structure and evolution

Comparative genomics

Genetic diversity / Population genetic

Genotype to phenotype analysis (GWAS, QTL detection...)

Breeding

Map based cloning

Developmental biology

Gene/protein/metabolite network inferences

Modeling of plant development and adaptation (to check with ecophysio)

Autre (veuillez préciser)

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* 1. Personal information : Family name (optional)

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* 2. First name (optional)

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* 3. Name of your Institute, company...

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* 4. Category of your provenance

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* 5. Position

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* 6. How old are you ?

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* 7. What are your fields of expertise?

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* 8. What data are you interested in ?please rank according to the importance of the data category for your research

Question Title

* 9. What analysis do you do ?

* 8. What data are you interested in ?

please rank according to the importance of the data category for your research